Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MESEPLYKLKAEFFKTLAHPARIRILELLVERDRSVGELLSSDVGLESSNLSQQLGVLRRAGVVAARRDGNAMIYSIAAPDIAELLAVARKVLARVLSDRVAVLEDLRAGGSAT
4GGG Chain:B ((16-93))
----------TEIFKALGDYNRIRIMELLSVSEASVGHI-SHQLNLSQSNVSHQLKLLKSAHVVKAKRQGQSMIYSLDDIHVATMLKQA-------------------------
General information:
TITO was launched using:
RESULT:
Template:
4GGG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60018 for 529 contacts (-113.5/contact) +
2D Compatibility (PS) -7963 + (NN) -1548 + (LL) 3112
1D Compatibility (HY) -9200 + (ID) 1750
Total energy: -77367.0 ( -146.25 by residue)
QMean score : 0.677
(partial model without unconserved sides chains):
PDB file :
Tito_4GGG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GGG-query.scw
PDB file :
Tito_Scwrl_4GGG.pdb
: