Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVTVGVICAIPQELAYLRGVLVDAKRQQVAQILFDSGQLDAHRVVLAAAGMGKVNTGLTATLLADRFGCRTIVFTGVAGGLDPELCIGDIVIADRVVQHDFGLLTDERLRPYQPGHIPFIEPTERLGYPVDPAVIDRVKHRLDGFTLAPLSTAAGGGGRQPRIYYGTILTGDQYLHCERTRNRLHHELGGM-AVEMEGGAVAQICASFDIPWLVIRALSDLAGADSGVDFNRFVGEVAASSARVLLRLLPVLTAC
4QEZ Chain:C ((3-226))
----IAVIGAMEEEVRILRDKLEQAETETVAGCEFTKGQLAGHEVILLKSGIGKVNAAMSTTILLERYKPEKVINTGSAGGFHHSLNVGDVVISTEVRHHD----VDVTAFNYEYGQVPGMPP----GFKADEA-------------LVALAEKCMQ-----QVVKGMIATGDSFMSDPNRVAAIRDKFENLYAVEMEAAAVAQVCHQYEVPFVIIRALSDIAGKESNVSFDQFLDQAALHSTNFIVKV-------
General information:
TITO was launched using:
RESULT:
Template:
4QEZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -182429 for 1899 contacts (-96.1/contact) +
2D Compatibility (PS) -23241 + (NN) -6056 + (LL) 2664
1D Compatibility (HY) -19600 + (ID) 3900
Total energy: -232562.0 ( -122.47 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_4QEZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QEZ-query.scw
PDB file :
Tito_Scwrl_4QEZ.pdb
: