Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVGPVGHQCAECVREGARAVRQPRTPFGGRQRSATPVVTYTLISLNALVFVMQVTVMG--LERQLALWPPAVASGQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVLVYLIAPLNTATAGASGAVFGLFGATFMVARRLHL---DV-RWVVALIV---INLAFTFLAPAISWQGHVGGLVTGALVAATYVYAPRERRNLIQATVTITVLVAFVVLIGWRTVDLLALFGGRLNLS
5F5B Chain:A ((91-272))
---------------------------------ERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFS--GPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSLNA-----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
5F5B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145946 for 1374 contacts (-106.2/contact) +
2D Compatibility (PS) -17522 + (NN) -4953 + (LL) 5948
1D Compatibility (HY) -12800 + (ID) 1750
Total energy: -177023.0 ( -128.84 by residue)
QMean score : 0.189
(partial model without unconserved sides chains):
PDB file :
Tito_5F5B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5F5B-query.scw
PDB file :
Tito_Scwrl_5F5B.pdb
: