Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVAERAGHQWCLFLDRDGVINRQVVGDYVRNWRQFEWLPGAARALKKLRAWAPYIVVVTNQQGVGAGLMSAVDVMVIHRHLQMQLASDGVLIDGFQVCPHHRS-------QRCGCRKPRPGLVL---DWLGRHPDSEPLLSIVVGDSLSDLELAHNVAAAAGACASVQIG---GASSGGVADASFDSLWEFAVAVGHARGERG
3L8E Chain:B ((8-183))
-----------IFLDRDGTIN--VDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYL--HIDMAA--SYMVGDKLEDMQAA--VAANVGTKVLVRTGKPITPEAENAADWVLNSLADLPQAI--------
General information:
TITO was launched using:
RESULT:
Template:
3L8E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125546 for 1319 contacts (-95.2/contact) +
2D Compatibility (PS) -17871 + (NN) -10578 + (LL) 1536
1D Compatibility (HY) -13600 + (ID) 3200
Total energy: -169259.0 ( -128.32 by residue)
QMean score : 0.365
(partial model without unconserved sides chains):
PDB file :
Tito_3L8E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L8E-query.scw
PDB file :
Tito_Scwrl_3L8E.pdb
: