Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKPRNPADYVIGDDVEVSDVDLKQEEVYVDGERLTDERVEQMASESLRLAREREANLIPGGKSLSGGSAHSPAVQVVVSKATHAKLKELARSRKMSVSKLLRPVLDEFVQRETGRILPRR
2K9I Chain:A ((2-54))
-------------------------------------------------------------GRPYKL---LNGIKLGVYIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDNHDKQ-----
General information:
TITO was launched using:
RESULT:
Template:
2K9I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10279 for 237 contacts (-43.4/contact) +
2D Compatibility (PS) -5961 + (NN) -3348 + (LL) 4408
1D Compatibility (HY) -4400 + (ID) 450
Total energy: -20030.0 ( -84.51 by residue)
QMean score : 0.651
(partial model without unconserved sides chains):
PDB file :
Tito_2K9I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K9I-query.scw
PDB file :
Tito_Scwrl_2K9I.pdb
: