Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANTGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLALDSADRLWIPVRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPRYADIGGGPLTECLADVVARFLPYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVGLNIPTGIPLRYDLDSAMRPLVRGGTYLDPEAAAAGAAAVAGQGRG
1RII Chain:D ((3-233))
--NTGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLALDSADRLWIPVRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPRYADIGGGPLTECLADVVARFLPYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVGLNIPTGIPLRYDLDSAMRPLVRGGTYLDP----------------
General information:
TITO was launched using:
RESULT:
Template:
1RII.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92411 for 1972 contacts (-46.9/contact) +
2D Compatibility (PS) -25074 + (NN) -15800 + (LL) 1332
1D Compatibility (HY) -31600 + (ID) 11550
Total energy: -175103.0 ( -88.79 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_1RII.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RII-query.scw
PDB file :
Tito_Scwrl_1RII.pdb
: