Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRGELWFAATP-GGDRPVLVLTRDPVADRIGAVVVVALTRTRRGLVSELELTAVENRVPSDCVVNFDNIHTLPRT-AFRRRITRLSPARLHEACQTLRASTGC
1UB4 Chain:A ((7-111))
PDMGDLIWVDFDP-GHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLS----GQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG-
General information:
TITO was launched using:
RESULT:
Template:
1UB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73727 for 707 contacts (-104.3/contact) +
2D Compatibility (PS) -10505 + (NN) -3190 + (LL) 244
1D Compatibility (HY) -4000 + (ID) 950
Total energy: -92128.0 ( -130.31 by residue)
QMean score : 0.669
(partial model without unconserved sides chains):
PDB file :
Tito_1UB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UB4-query.scw
PDB file :
Tito_Scwrl_1UB4.pdb
: