Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDSKVAIVTGAAQGIGQAYAQALAREGASVVVADINADGAAAVAKQIVADGGTAIHVPVDVSDEDSAKAMVDRAVGAFGGIDYLVNNAAIYGGMKLDLLLTVPLDYYKKFMSVNHDGVLVCTRAVYKHMAKRGGGAIVNQSSTAAWLYSNF----YGLAKVGVNGLTQQLARELGGMKIRINAIAPGPIDTEATRTVTPAELVKNMVQTIPLSRMGTPEDLVGMCLFLLSDSASWITGQIFNVDGGQIIRS
4NBU Chain:D ((11-247))
-LQDKVAIITGAANGIGLEAARVFMKEGAKVVIADFNE----AAGKEAVEANPGVVFIRVDVSDRESVHRLVENVAERFGKIDILINNAGI---TRDSMLSKMTVDQFQQVINVNLTGVFHCTQAVLPYMAEQGKGKIINTSSVTG-TYGNVGQTNYAAAKAGVIGMTKTWAKELARKGINVNAVAPGFTETAMVAEV-PEKVIEKMKAQVPMGRLGKPEDIANAYLFLASHESDYVNGHVLHVDGG-----
General information:
TITO was launched using:
RESULT:
Template:
4NBU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161704 for 2018 contacts (-80.1/contact) +
2D Compatibility (PS) -25410 + (NN) -11035 + (LL) 804
1D Compatibility (HY) -19200 + (ID) 4700
Total energy: -221245.0 ( -109.64 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_4NBU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NBU-query.scw
PDB file :
Tito_Scwrl_4NBU.pdb
: