Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRHWPLFDLRITTPRLQLQLPTEELCDQLIDTILEGVHDPDRMPFSVPWTRASREDLPFNTLSHLWQQLAGFKRDDWSLPLAVLVDGRAVGVQALSSKDFPITRQVDSGSWLGLRYQGHGYGTEMRAAVLYFAFAELEAQVATSRSFVDNPASIAVSRRNGYRDNGLDRVAREGAMAEALLFRLTRDDWQRHRTVEVRVDGFDRCRPLFGPLEPPRY
2VZZ Chain:D ((2-212))
-SRHWPLFDLRITTPRLQLQLPTEELCDQLIDTILEGVHDPDRMPFSVPWTRASREDLPFNTLSHLWQQLAGFKRDDWSLPLAVLVDGRAVGVQALSSKDFPITRQVDSGSWLGLRYQGHGYGTEMRAAVLYFAFAELEAQVATSRSFVDNPASIAVSRRNGYRDNGLDRVAREGAMAEALLFRLTRDDWQRHRTVEVRVDGFDRCRPLFGP------
General information:
TITO was launched using:
RESULT:
Template:
2VZZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105578 for 1841 contacts (-57.3/contact) +
2D Compatibility (PS) -22680 + (NN) -11112 + (LL) 400
1D Compatibility (HY) -28400 + (ID) 10500
Total energy: -177870.0 ( -96.62 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_2VZZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VZZ-query.scw
PDB file :
Tito_Scwrl_2VZZ.pdb
: