Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTMIVASVATGALATIARWLLTRRSVILREVGPETTPAAPARTAELGLSGAGPTVVHFRAPGCAPCDRVRRGVGDVCADLGDVAHI-EVDLDSNPQAARRFSVLSLPTTLIFDVDGRQRYRTSGVP-KAADLRSALKPLLA
4POB Chain:B ((27-112))
------------------------------------------------VSSNKPVLVDFWATWCGPCKMVAPVLEEIAKDHGEALTIAKLDVDANPETARAFQVTSIPTLILFQ-NGEATKRIVGAKSKSALLRE-------
General information:
TITO was launched using:
RESULT:
Template:
4POB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28885 for 546 contacts (-52.9/contact) +
2D Compatibility (PS) -9002 + (NN) -1207 + (LL) 5296
1D Compatibility (HY) -5200 + (ID) 1550
Total energy: -40548.0 ( -74.26 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_4POB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4POB-query.scw
PDB file :
Tito_Scwrl_4POB.pdb
: