Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILDMFRLDDKVAVITGGGRGLGAAIALAFAQAGADVLIASRTSSELDAVAEQIRAAGRRAHTVAADLAHPEVTAQLAGQAVGAFGKLDIVVNNVGGTMPNTLLSTSTKDLADAFAFNVGTAHALTVAAVPLMLEHSGGGSVINISSTMGRLAARGFAAYGTAKAALAHYTRLAALDLCPR-VRVNAIAPGSILTSALEVVAANDELRAPMEQATPLRRLGDPVDIAAAAVYLASPAGSFLTGKTLEVDGGLTFPNLDLPIPDL
1FMC Chain:B ((5-249))
---DNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKP-FDMPMADFRRAYELNVFSFFHLSQLVAPEM-EKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVIT-PEIEQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGG-------------
General information:
TITO was launched using:
RESULT:
Template:
1FMC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157837 for 2101 contacts (-75.1/contact) +
2D Compatibility (PS) -26872 + (NN) -12332 + (LL) 1300
1D Compatibility (HY) -16800 + (ID) 4900
Total energy: -217441.0 ( -103.49 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_1FMC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FMC-query.scw
PDB file :
Tito_Scwrl_1FMC.pdb
: