Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEPLRVPPSAPARLVVLASGTGSLLRSLLDAAVGDYPARVVAVGVDRECRAAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVAALATHGVTVVGRTATMGRKVTIG
3DCJ Chain:B ((4-208))
---PLRVPPSAPARLVVLASGTGSLLRSLLDAAVGDYPARVVAVGVDRECRAAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVAALATHGVTVVGRTATM-------
General information:
TITO was launched using:
RESULT:
Template:
3DCJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168833 for 1686 contacts (-100.1/contact) +
2D Compatibility (PS) -23359 + (NN) -15519 + (LL) 700
1D Compatibility (HY) -26400 + (ID) 10250
Total energy: -243661.0 ( -144.52 by residue)
QMean score : 0.661
(partial model without unconserved sides chains):
PDB file :
Tito_3DCJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DCJ-query.scw
PDB file :
Tito_Scwrl_3DCJ.pdb
: