Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTKDAVAVVTGGASGLGLATTKRLLDAGAQVVVVDLRGDDVVGGLGDRARFAQADVTDEAAVSNALELADSLGPVRVVVNCAGTGNAIRVLSRDGVFPLAAFRKIVDINLVGTFNVLRLGAERIAKTEPIG--EERGVIINTASVAAFDGQIGQAAYSASKGGVVGMTLPIARDLASKLIRVVTIAPGLFDTPLLASLPAEAKASLGQQVPHPSRLGNPDEYGALVLHIIENPMLNGEVIRLDGAIRMAPR
3TL3 Chain:B ((9-252))
----DAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVVADLGDRARFAAADVTDEAAVASALDLAETMGTLRIVVNCAGTGNAIR--------SLAAFRKIVDINLVGSFNVLRLAAERIAKTEPV-NAEERGVIINTASVAAFDGQIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLASLPEEARASLGKQVPHPSRLGNPDEYGALAVHIIENPMLNGEVIRLDGAI-----
General information:
TITO was launched using:
RESULT:
Template:
3TL3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155932 for 2009 contacts (-77.6/contact) +
2D Compatibility (PS) -25119 + (NN) -11426 + (LL) 1144
1D Compatibility (HY) -29600 + (ID) 10250
Total energy: -231183.0 ( -115.07 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_3TL3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TL3-query.scw
PDB file :
Tito_Scwrl_3TL3.pdb
: