Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRSTPPASAGRSTPPALAGHSTPPALAGHSTLCGRPVAGDRALIMAIVNRTPDSFYDKGATFSDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLISVDTWRAQVAKAACAAGADLINDTWGGVDPAMPEVAAEFGAGLVCAHTGGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVAAGVAREKVLIDPAHDFGKNTFHGLLLLRHVADLVMTGWPVLMALSNKDVVGETLGVDLTERLEGTLAATALAAAAGARMFRVHEVAATRRVLEMVASIQGVRPPTRTVRGLA |
| 2VP8 Chain:B ((29-310)) | ----------------------------HSTLCGRPVAGDRALIMAIVNRT------------DAAARDAVHRAVADGADVIDVGG--------VDVDTEITRLVPFIEWLRGAYPDQLISVDTWRAQVAKAACAAGADLINDTWGGVDPAMPEVAAEFGAGLVCAHT-------------YGTTTRGVVDAVISQVTAAAERAVAAGVAREKVLIDPAHDFGKNTFHGLLLLRHVADLVMTGWPVLMALSN-------------ERLEGTLAATALAAAAGARMFRVHEVAATRRVLEMVASIQGVRPP-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VP8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -184409 for 1981 contacts (-93.1/contact) +
2D Compatibility (PS) -26822 + (NN) -17999 + (LL) 2264
1D Compatibility (HY) -31200 + (ID) 11800
Total energy: -269966.0 ( -136.28 by residue)
QMean score : 0.526
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