Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEEMALAQQVPNLGLARFSVQDKSILITGATGSLGRVAARALADAGARLTLAGGN----SAGLAELVNGAGIDDAAVVTCRPDSLADAQQMVEAALGRYGRLDGVLVASGSNHVAPITEMAVEDFDAVMDANVRGAWLVCRAAGRVLLEQGQGGSVVLVSSVRGGLGNAAGYSAYCPSKAGTDLLAKTLAAEWGGHGIRVNALAPTVFRSAVTEWMFTDDPKGRATREAMLARIPLRRFAEPEDFVGALIYLLSDASSFYTGQVMYLDGGYTAC
1VL8 Chain:B ((17-266))
-----------------FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAF-RCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFS-LLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEK----LDYMLKRIPLGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGWTA-
General information:
TITO was launched using:
RESULT:
Template:
1VL8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158700 for 2159 contacts (-73.5/contact) +
2D Compatibility (PS) -27094 + (NN) -15556 + (LL) 2288
1D Compatibility (HY) -18400 + (ID) 4400
Total energy: -221862.0 ( -102.76 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_1VL8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VL8-query.scw
PDB file :
Tito_Scwrl_1VL8.pdb
: