Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------MDQQS--TRTDITVNVDGFWMLQALL-DIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQGIVVNDA--VNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVLARRGQHWVSAVRV--GNDITVDDVTVSD-----SASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFS-GGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV |
| 1RLV Chain:A ((2-305)) | IGGDFAVVKAKKSLERRGFGVKRGDKIYLHPLEVVYLQIKGIESFGELEDVLSWAESRMEDFSTYYFVYEDLRDRGNKVKIQGEFLLTKKPYLPISERKTIRMEEIAEKARNFDELRLAVVDEESEITYFRVYEPDMMGEQKEELPEIAGVLSDEYVITKQTEIFSRYFYGSEKGDLVTLSLIESLYLLDLGKLNLLNADREELVKRAREVERNFDRRYEVYRNLKERGFVVKTGFKFG-------SEFRVYRKVESVDDLPHSEYLVDIADSREIRLIDLARAVRLAQNVRKRMVFAYGKNYLCFERVKV--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RLV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -68153 for 2066 contacts (-33.0/contact) +
2D Compatibility (PS) -29658 + (NN) -8056 + (LL) 1132
1D Compatibility (HY) -8800 + (ID) 1350
Total energy: -114885.0 ( -55.61 by residue)
QMean score : 0.122
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