Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCQTCRVGKRRDAREQIEAKIVELGRRQLLDHGAAGLSLRAIARNLGMVSSAVYRYVSSRDELLTLLLVDAYSDLADTVDRARDDTVADSWSDDVIAIARAVRGWAVTNPARWALLYGSPVPGYHAPPDRTAGVATRVVGAFFDAIAAGIATGDIRLTDDVAPQPMSSDFEKIRQEFGFPGDDRVVTKCFLLWAGVVGAISLEVFGQYGADMLTDPGVVFDAQTRLLVAVLAEH
5D1R Chain:B ((14-234))
-------------REQIEAKIVELGRRQLLDHGAAGLSLRAIARNLGMVSSAVYRYVSSRDELLTLLLVDAYSDLADTVDRARDDTVADSWSDDVIAIARAVRGWAVTNPARWALLYGSPVPGYHAPPDRTAGVATRVVGAFFDAIAAGIATGDIRLTDDVAPQPMSSDFEKIRQEFGFPGDDRVVTKCFLLWAGVVGAISLEVFGQYGADMLTDPGVVFDAQTRLLVAVLAEH
General information:
TITO was launched using:
RESULT:
Template:
5D1R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156724 for 1601 contacts (-97.9/contact) +
2D Compatibility (PS) -23936 + (NN) -11337 + (LL) 944
1D Compatibility (HY) -31200 + (ID) 11050
Total energy: -233303.0 ( -145.72 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_5D1R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5D1R-query.scw
PDB file :
Tito_Scwrl_5D1R.pdb
: