Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQPSPDSPAPLNVTVPFDSELGLQFTELGPDGARAQLDVRPKLLQLTGVVHGGVYCAMIESIASMAAFAWLNSHGEGGSVVGVNNNTDFVRSISSGMVYGTAEPLHRGRRQQLWLVTITDDTDRVVARGQVRLQNLEARP
3S4K Chain:B ((19-144))
--------------VPFDSELGLQFTELGPDGARAQLDVRPKLLQLTGVVHGGVYCAMIESIASMAAFAWLNS--EGGSVVGVNNNTDFVRSISSGMVYGTAEPLHRGRRQQLWLVTITDDTDRVVARGQVRLQNLEARP
General information:
TITO was launched using:
RESULT:
Template:
3S4K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62830 for 930 contacts (-67.6/contact) +
2D Compatibility (PS) -12371 + (NN) 505 + (LL) -8
1D Compatibility (HY) -17200 + (ID) 6200
Total energy: -98104.0 ( -105.49 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_3S4K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S4K-query.scw
PDB file :
Tito_Scwrl_3S4K.pdb
: