Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYVIGSECVDVMDKSCVQECPVDCIYEGARMLYINPDECVDCGACKPACRVEAIYWEGDLPDDQHQHLGDNAAFFHQVLPGRVAPLGSPGGAAAVGPIGVDTPLVAAIPVECP
1GAO Chain:D ((2-74))
--FVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCASCEPECPAQAIFSEDEVPEDMQEFIQLNAEL---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1GAO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64868 for 521 contacts (-124.5/contact) +
2D Compatibility (PS) -7486 + (NN) -4900 + (LL) 1704
1D Compatibility (HY) -9600 + (ID) 1500
Total energy: -86650.0 ( -166.31 by residue)
QMean score : 0.314
(partial model without unconserved sides chains):
PDB file :
Tito_1GAO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GAO-query.scw
PDB file :
Tito_Scwrl_1GAO.pdb
: