Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRPRTDAIHHHVVVNAPIERAFAVFTTR--FGDFKPREHNLLAIPITETVFECHAGGHIYDRGV-DGS-VCKWARVLVYEPPSRVLFTWDIGPTWRPETDLAKTSEVEVRFTAQSAETTRVDLEHRHLDRHGPGWESVADGVDSEAGWPLYLRRYTDLLCIQVQP
2LEQ Chain:A ((2-144))
---EIKLIAQVKTVINAPIEKVWEALVNPEIIKEYMFG-TT--------VVSDWKEGSQIVWKGEWKGKAYEDKGTILQFNERSILQYSHFSPLTGKP-DLPENYHVVTITLTALK-KGVEVELTQDNNETEK-----EQKHS--EDNWNTMLEGLKKFLENKV--
General information:
TITO was launched using:
RESULT:
Template:
2LEQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46934 for 855 contacts (-54.9/contact) +
2D Compatibility (PS) -15043 + (NN) -2656 + (LL) 1428
1D Compatibility (HY) -4000 + (ID) 1250
Total energy: -68455.0 ( -80.06 by residue)
QMean score : 0.273
(partial model without unconserved sides chains):
PDB file :
Tito_2LEQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LEQ-query.scw
PDB file :
Tito_Scwrl_2LEQ.pdb
: