Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQQSLAVKTFEDLFAELGDRARTRPADSTTVAALDGGVHALGKKLLEEAGEVWLAAEHESNDALAEEISQLLYWTQVLMISRGLSLDDVYRKL
1YVW Chain:A ((4-88))
--------AFKLLYKTIEERKGSPLPESYTNYLFSKGEDKILKKIGEECAEVIIACKNNDKEEVVKEMVDVFYHCFVLLAEKNIALEDVMREV
General information:
TITO was launched using:
RESULT:
Template:
1YVW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14296 for 495 contacts (-28.9/contact) +
2D Compatibility (PS) -9391 + (NN) -7881 + (LL) 996
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -34172.0 ( -69.03 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_1YVW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YVW-query.scw
PDB file :
Tito_Scwrl_1YVW.pdb
: