Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARDARKRTSSNFPQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRLNPERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRTRRFGSA
4ONC Chain:B ((1-284))
------------FPQLPPAPDDYPTFPDTSTWPVVFPELPAAP--GPCRPPQHTSKAAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRLNPERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRTRRFGSA
General information:
TITO was launched using:
RESULT:
Template:
4ONC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134606 for 2287 contacts (-58.9/contact) +
2D Compatibility (PS) -30578 + (NN) -20190 + (LL) 620
1D Compatibility (HY) -35200 + (ID) 14100
Total energy: -234054.0 ( -102.34 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_4ONC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ONC-query.scw
PDB file :
Tito_Scwrl_4ONC.pdb
: