Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSPFGNPIPGLVELGVGPEPGADDANLVRLTELPAGSPVAVVVRQLTEHVQGDIDLITRLKDAGVVPNARVTVETTPGGGVTIVIPGHENVTLPHEMAHAVKVEKV
1U8R Chain:J ((1-230))
MNELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSPFGNPIPGLDELGVG--------NLVRLTELPAGSPVAVVVRQLTEHVQGDIDLITRLKDAGVVPNARVTVETTPGGGVTIVIPGHENVTLPHEMAHAVKVEKV
General information:
TITO was launched using:
RESULT:
Template:
1U8R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105734 for 1767 contacts (-59.8/contact) +
2D Compatibility (PS) -24728 + (NN) -14507 + (LL) -212
1D Compatibility (HY) -30000 + (ID) 11050
Total energy: -186231.0 ( -105.39 by residue)
QMean score : 0.866
(partial model without unconserved sides chains):
PDB file :
Tito_1U8R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U8R-query.scw
PDB file :
Tito_Scwrl_1U8R.pdb
: