Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITMGHTIVMGRRTWDSLPAKVRPLPGRRNVVLSRQADFMASGAEVVGSLEEALTSPETWVIGGGQVYALALPYATRCEVTEVDIGLPREAGDALAPVLDETWRGETGEWRFSRSGLRYRLYSYHRS
4KNE Chain:B ((21-179))
MVGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITMGHTIVMGRRTWDSLPAKVRPLPGRRNVVLSRQADFMASGAEVVGSLEEALTSPETWVIGGGQVYALALPYATRCEVTEVDIGLPREAGDALAPVLDETWRGETGEWRFSRSGLRYRLYSYHRS
General information:
TITO was launched using:
RESULT:
Template:
4KNE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90296 for 1157 contacts (-78.0/contact) +
2D Compatibility (PS) -17000 + (NN) -5712 + (LL) 0
1D Compatibility (HY) -21200 + (ID) 7950
Total energy: -142158.0 ( -122.87 by residue)
QMean score : 0.900
(partial model without unconserved sides chains):
PDB file :
Tito_4KNE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KNE-query.scw
PDB file :
Tito_Scwrl_4KNE.pdb
: