Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVGTLVASVLPATVFEDLAYAELYSDPPGLTPLPEEAPLIARSVAKRRNEFITVRHCARIALDQLGVPPAPILKGDKGEPCWPDGMVGSLTHCAGYRGAVVGRRDAVRSVGIDAEPHDVLPNGVLDAISLPAERADMPRTMPAALHWDRILFCAKEATYKAWFPLTKRWLGFEDAHITFETDSTGWTGRFVSRILIDGSTLSGPPLTTLRGRWSVERGLVLTAIVL
4QVH Chain:B ((372-598))
MTVGTLVASVLPATVFEDLAYAELYSDPPGLTPLPEEAPLIARSVAKRRNEFITVRHCARIALDQLGVPPAPILKGDKGEPCWPDGMVGSLTHCAGYRGAVVGRRDAVRSVGIDAEPHDVLPNGVLDAISLPAERADMPRTMPAALHWDRILFCAKEATYKAWFPLTKRWLGFEDAHITFETDSTGWTGRFVSRILIDGSTLSGPPLTTLRGRWSVERGLVLTAIVL
General information:
TITO was launched using:
RESULT:
Template:
4QVH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141766 for 1881 contacts (-75.4/contact) +
2D Compatibility (PS) -24067 + (NN) -14482 + (LL) 0
1D Compatibility (HY) -31600 + (ID) 11350
Total energy: -223265.0 ( -118.69 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_4QVH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QVH-query.scw
PDB file :
Tito_Scwrl_4QVH.pdb
: