Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAGRPLHAFEVVATRHLAPHMVRVVLGGSGFDT---FVPSDFTDSYIKLVFVDDDVDVGRLPRPLTLDSFADLPTAKRPPVRTMTVRHVDAAAREIAVDIVLHGEHGVAGPWAAGAQRGQPIYLMGPGGAYAPDPAADWHLLAGDESAIPAIAAALEALPPDAIGRAFIEVAGPDDEIGLTAPDAVEVNWVYRGGRADLVPEDRAGDHAPLIEAVTTTAWL-PGQVHVFIHGEAQAVMHNLRPYVR-NERGVDAKWASSISGYWRRGRTEEMFRKWKKELAEAEAGTH |
2GPJ Chain:A ((6-249)) | ---PAPRELEVIRSTYITPHMLRITLGGAGLAGFPADQE----SAYIKLLFPQAG---------------------ERPLMRTYTIRQQRD--DEIDVDFVLHDTDGPASSWAKTAQVGELIQIGGPGLKKLINFEADWFLLAGDMTALPAISVNLAKLPNNAVGYAVIEVLSEADIQPLVHPEHVELHWVINPEADP-EG----R----PLVERIAQLPWLAGEPAVWIACEFN-SMRALRRHFKQA-HALP-KSHFYTSSYWKIGCNEGEHKLVKQEDEQLENG-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GPJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -130076 for 1886 contacts (-69.0/contact) +
2D Compatibility (PS) -26591 + (NN) -14881 + (LL) 2420
1D Compatibility (HY) -12400 + (ID) 4200
Total energy: -185728.0 ( -98.48 by residue)
QMean score : 0.493
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