Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTARPLSELVERGWAAALEP--VADQVAHMGQFLRAEIAAGRRYLPAGSNVLRAFTF-PFDNVRVLIVGQDPYPTPGHAVGLSFSVAPDVRPWPRSLANIFDEYTADL-GYPLPSNGDLTPWAQRGVLLLNRVLTVRPSNPASHRGKGWEAVTECAIRALAARAAPLVAILWGRDASTLKPMLAAGNCVAIESPHPSPLSASRGFFGSRPFSRANELLVGMGAEPIDWRLP
4UQM Chain:A ((27-241))
-------------WQEALLPEFSAPYFHELTDFLRQERKEYTIYPPA-PDVFNALRYTPLGEVKVLILGQDPYHGPNQAHGLSFSVRPGVR-VPPSLRNIYKELTEDIPGFVAPKHGYLRSWAEQGVLLLNAVLTVRAAQANSHQGKGWEHFTDAVIKAVNAKEERVVFILWGSYARKKKKLITGKNHVVIESGHPSPLS-EQYFFGTRPFSKTNEALEKAGRGPVEWQLP
General information:
TITO was launched using:
RESULT:
Template:
4UQM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109294 for 1723 contacts (-63.4/contact) +
2D Compatibility (PS) -22784 + (NN) -12334 + (LL) 848
1D Compatibility (HY) -19200 + (ID) 5200
Total energy: -167964.0 ( -97.48 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_4UQM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UQM-query.scw
PDB file :
Tito_Scwrl_4UQM.pdb
: