Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVARNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPAEGPAVKRGVGASAAKKVAKKAPAKKATKAAKKAATKAPARKAATKAPAKKAATKAPAKKAVKATKSPAKKVTKAVKKTAVKASVRKAATKAPAKKAAAKRPATKAPAKKATARRGRK
4PT4 Chain:B ((1-97))
MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVARNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPA---------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4PT4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13380 for 522 contacts (-25.6/contact) +
2D Compatibility (PS) -10402 + (NN) -3990 + (LL) 8828
1D Compatibility (HY) -10400 + (ID) 4850
Total energy: -34194.0 ( -65.51 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_4PT4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PT4-query.scw
PDB file :
Tito_Scwrl_4PT4.pdb
: