Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIAGRSLVYFSSVSENTHRFVQKLGIPATRIPLHGR--IEVDEPYVLILPTYGGGRANPGLDAGGYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTEDDVAAVRTGLAEFWKEQTCHQPSLQSL
3N3B Chain:D ((24-151))
-------LVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGG------GTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSDIENVRKGVTEFWQR-----------
General information:
TITO was launched using:
RESULT:
Template:
3N3B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112334 for 916 contacts (-122.6/contact) +
2D Compatibility (PS) -13635 + (NN) -5360 + (LL) 1076
1D Compatibility (HY) -15600 + (ID) 4150
Total energy: -150003.0 ( -163.76 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_3N3B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N3B-query.scw
PDB file :
Tito_Scwrl_3N3B.pdb
: