Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVTVYTKPACVQCSATSKALDKQGIAYQKVDISLDSEARDYVMA-LGYLQAPVVVAGNDHWSGFRPDRIKALAGAALTA
4TR0 Chain:B ((3-72))
-NITIYTKNYCPYCKKAVSLLSSKGVDFKEVDVTHDSKAFEDVMAKTGWDTVPQVFVDEEFLGGC--DDIHAL-------
General information:
TITO was launched using:
RESULT:
Template:
4TR0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28577 for 434 contacts (-65.8/contact) +
2D Compatibility (PS) -7307 + (NN) -2040 + (LL) 832
1D Compatibility (HY) -3200 + (ID) 1050
Total energy: -41342.0 ( -95.26 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_4TR0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TR0-query.scw
PDB file :
Tito_Scwrl_4TR0.pdb
: