Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTPSATVAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAADLARLITPFAERHGVINVP
5D1W Chain:D ((14-209))
-------------IPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAADLARLITPFAERHGVIN--
General information:
TITO was launched using:
RESULT:
Template:
5D1W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131951 for 1463 contacts (-90.2/contact) +
2D Compatibility (PS) -21108 + (NN) -9520 + (LL) 864
1D Compatibility (HY) -26800 + (ID) 9800
Total energy: -198315.0 ( -135.55 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_5D1W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5D1W-query.scw
PDB file :
Tito_Scwrl_5D1W.pdb
: