Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDRDRLRPPLDERSLRDQLIGAGSGWRQLDVVAQTGSTNADLLARAASGADIDGVVLIAEHQTAGRGRHGRGWAATARAQIILSVGVRVVDVPVQAWGWLSLAAGLAVLDSVAPLIAVPPAETGLKWPNDVLARGGKLAGILAEVAQPFVVLGVGLNVTQAPEEVDPDATSLLDLGVAAPDRNRIASRLLRELEARIIQWRNANPQLAADYRARSLTIGSRVRVELPGGQDVVGIARDIDDQGRLCLDVGGRTVVVSAGDVVHLR
4OP0 Chain:B ((5-267))
--DRDRLRPPLDERSLRDQLIG--SGWRQLDVVAQTGSTNADLLARAASGADIDGVVLIAEHQTAGRGRHGRGWAATARAQIILSVGVRVVDVPVQAWGWLSLAAGLAVLDSVAPLIA----ETGLKWPNDVLARGGKLAGILAEVAQPFVVLGVGLNVTQAPEEVDPDATSLLDLGVAAPDRNRIASRLLRELEARIIQWRNANPQLAADYRARSLTIGSRVRVELPGGQDVVGIARDIDDQGRLCLDVGGRTVVVSAGDVVHL-
General information:
TITO was launched using:
RESULT:
Template:
4OP0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161150 for 2174 contacts (-74.1/contact) +
2D Compatibility (PS) -28585 + (NN) -18949 + (LL) 388
1D Compatibility (HY) -33600 + (ID) 12800
Total energy: -254696.0 ( -117.16 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_4OP0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OP0-query.scw
PDB file :
Tito_Scwrl_4OP0.pdb
: