Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDAFGLDDLPRERR
4WIF Chain:B ((4-124))
---VDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVQNVSYGLTLCAECAVVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDAFG---------
General information:
TITO was launched using:
RESULT:
Template:
4WIF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90885 for 977 contacts (-93.0/contact) +
2D Compatibility (PS) -13092 + (NN) -7645 + (LL) 456
1D Compatibility (HY) -18400 + (ID) 6000
Total energy: -135566.0 ( -138.76 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_4WIF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WIF-query.scw
PDB file :
Tito_Scwrl_4WIF.pdb
: