Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDLITVKKLGSRIGAQIDGVRLGGDLDPAAVNEIRAALLAHKVVFFRGQHQLDDAEQLAFAGLLGTPIGHPAAIALADDAPIITPINSEFGKANRWHTDVTFAANYPAASVLRAVSLPSYGGSTLWANTAAAYAELPEPLKCLTENLWALHTNRYDYVTTKPLTAAQRAFRQVFEKPDFRTEHPVVRVHPETGERTLLAGDFVRSFVGLDSHESRVLFEVLQRRITMPENTIRWNWAPGDVAIWDNRATQHRAIDDYDDQHRLMHRVTLMGDVPVDVYGQASRVISGAPMEIAG
4CVY Chain:D ((4-287))
---LITVKKLGSRIGAQIDGVRLGGDLDPAAVNEIRAALLAHKVVFFRGQHQLDDAEQLAFAGLLGTPI-------------------------NRWHTDVTFAANYPAASVLRAVSLPSYGGSTLWANTAAAYAELPEPLKCLTENLWALHTN------------------------DFRTEHPVVRVHPETGERTLLAGDFVRSFVGLDSHESRVLFEVLQRRITMPENTIRWNWAPGDVAIWDNRATQHRAIDDYDDQHRLMHRVTLMGDVPVDVYGQASRVIS--------
General information:
TITO was launched using:
RESULT:
Template:
4CVY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110631 for 1924 contacts (-57.5/contact) +
2D Compatibility (PS) -25885 + (NN) -16707 + (LL) 3744
1D Compatibility (HY) -31600 + (ID) 11750
Total energy: -192829.0 ( -100.22 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_4CVY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CVY-query.scw
PDB file :
Tito_Scwrl_4CVY.pdb
: