Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLSVAPKEIAGHGLLDGKVVVVTAAAGTGIGSATARRALAEGADVVISDHHERRLGETAAELSALGLGRVEHVVCDVTSTAQVDALIDSTTARMGRLDVLVNNAGLGGQTPVADMTDDEWDRVLDVSLTSVFRATRAALRYFRDAPHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAAEYGVRINAVSPSIARHKFLDKTASAELLDRLAAGEAFGRAAEPWEVAATIAFLASDYSSYLTGEVISVSCQHP
3O38 Chain:C ((5-264))
MNLSEAPKEIDGHGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSI---------------------EAFGRAAEPWEVAATIAFLASDYSSYMTGEVVSVSSQ--
General information:
TITO was launched using:
RESULT:
Template:
3O38.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129715 for 2086 contacts (-62.2/contact) +
2D Compatibility (PS) -25975 + (NN) -6429 + (LL) 1636
1D Compatibility (HY) -27600 + (ID) 10250
Total energy: -198333.0 ( -95.08 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_3O38.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O38-query.scw
PDB file :
Tito_Scwrl_3O38.pdb
: