Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALDLTAYFDRINYRGATDPTLDVLQDLVTVHSRTIPFENLDPLLGVPVDDLSPQALADKLVLRRRGGYCFEHNGLMGYVLAELGYRVRRFAARVVWKLAPDAPLPPQTHTLLGVTFPGSGGCYLVDVGFGGQTPTSPLRLETGAVQPTTHEPYRLEDRVDGFVLQAMVRDTWQTLYEFTTQTRPQIDLKVASWYASTHPASKFVTGLTAAVITDDARWNLSGRDLAVHRAGGTEKIRLADAAAVVDTLSERFGINVADIGERGALETRIDELLARQPGADAP
2VFC Chain:B ((4-273))
---DLTGYLDRINY-GATDPTLDVLRDLVSAHTGAIAFENLDPLMGVPVDDLSAEALADKLVDRRRGGYCYEHNGLIGYVLAELGYRVRRLAGRVVWLAPPDAPTPAQTHTVLAVTFPGCQGPYLVDVGFGGMTPTAPLRLETGTVQQTALEPYRLDDRGDGLVLQAMVRDEWQALYEFSTLTRPQVDLRVGSWFVSTHPTSHFVTGLMAATVADDARWNLMGRNLAIHRRGGTEKILLEDAAAVVDTLGDRFGINVADVGERGRLEARIDKV----------
General information:
TITO was launched using:
RESULT:
Template:
2VFC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146772 for 2218 contacts (-66.2/contact) +
2D Compatibility (PS) -28789 + (NN) -17320 + (LL) 928
1D Compatibility (HY) -30800 + (ID) 10250
Total energy: -233003.0 ( -105.05 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_2VFC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VFC-query.scw
PDB file :
Tito_Scwrl_2VFC.pdb
: