Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVREAGEVVAIVPAAGSGERLAVGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGHRAMIVAGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVRG
3OKR Chain:D ((7-231))
------EVVAIVPAA----------PKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGHRAMIVAGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQR----------TDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVRG
General information:
TITO was launched using:
RESULT:
Template:
3OKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154470 for 1675 contacts (-92.2/contact) +
2D Compatibility (PS) -23052 + (NN) -14815 + (LL) 1360
1D Compatibility (HY) -28400 + (ID) 10250
Total energy: -229627.0 ( -137.09 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_3OKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OKR-query.scw
PDB file :
Tito_Scwrl_3OKR.pdb
: