Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS
4L5G Chain:A ((3-161))
-EFRPGDKVVLPPYGVGVVAGIAQRSVSGVSRAYYQVDFPGSRSKAYVPVEAPHSVGLRKALAPEEVPVILDLLKNGRMPLPKQWAARHRKTSEILADGNPYRIAQMAGQLRAWEVERGLPDLDRQALRRAIHLLAEEVAQSLEITVQEAKRLFEEAWGE--
General information:
TITO was launched using:
RESULT:
Template:
4L5G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10891 for 1081 contacts (-10.1/contact) +
2D Compatibility (PS) -17348 + (NN) -7065 + (LL) 496
1D Compatibility (HY) 800 + (ID) 1350
Total energy: -35358.0 ( -32.71 by residue)
QMean score : 0.342
(partial model without unconserved sides chains):
PDB file :
Tito_4L5G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4L5G-query.scw
PDB file :
Tito_Scwrl_4L5G.pdb
: