Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVVKINAIEVPAGAGPELEKRFAHRAHAVENSPGFLGFQLLRPVKGEERYFVVTHWESDEAFQAWANGPAIAAHAGHRANPVATGASLLEFEVVLDVGGTGKTA
4NL5 Chain:B ((2-101))
-PVVKINAIEVPAGAGPELEKRFAHRAHAVENSPGFLGFQLLRPVKGEERYFVVTHWESDEAFQAWANGPAIAAHAGHRANPVATGASLLEFEVVLDVGGT----
General information:
TITO was launched using:
RESULT:
Template:
4NL5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27340 for 609 contacts (-44.9/contact) +
2D Compatibility (PS) -10916 + (NN) -3669 + (LL) 296
1D Compatibility (HY) -12000 + (ID) 5000
Total energy: -58629.0 ( -96.27 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_4NL5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NL5-query.scw
PDB file :
Tito_Scwrl_4NL5.pdb
: