Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRSL--LILDRDGVINLDSDDYIKTLDEWIPIPSSIEAIARLSQAGWTVAVATNQSGIARGYYDLAVLEAMHARLRELVAEQGGEVGLIVYCPHGPDDG-------CDCRKPKPGMLRQIGEHYGVDLSGIWFVGDSIGDLEAARAVDC-QPVLVKTGKGVRTLGKPLPEGTLIFDDLAAVASALLQ
3L8E Chain:B ((4-161))
---SVPAIFLDRDGTINVDHG-YVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLPQAIKKQ-
General information:
TITO was launched using:
RESULT:
Template:
3L8E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94136 for 1155 contacts (-81.5/contact) +
2D Compatibility (PS) -17434 + (NN) -17402 + (LL) 304
1D Compatibility (HY) -14000 + (ID) 2950
Total energy: -145618.0 ( -126.08 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_3L8E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L8E-query.scw
PDB file :
Tito_Scwrl_3L8E.pdb
: