Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERAAEHLQRCVEQDPKYSAGWKLLGKARQAAGDLAGARQAWEQGLATAATHGDKQAEKEMTVFLRKLDRART
1NA0 Chain:B ((29-104))
--IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG------
General information:
TITO was launched using:
RESULT:
Template:
1NA0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10429 for 545 contacts (-19.1/contact) +
2D Compatibility (PS) -8819 + (NN) -8236 + (LL) 996
1D Compatibility (HY) -2800 + (ID) 1250
Total energy: -30538.0 ( -56.03 by residue)
QMean score : 0.749
(partial model without unconserved sides chains):
PDB file :
Tito_1NA0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NA0-query.scw
PDB file :
Tito_Scwrl_1NA0.pdb
: