Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTFDLTAALGDRANQPEISRLLVAQLMTSNNEDTRKLRRAQER--------EQTQELNELAHRLAGMASLIHAHAVERACHQLEIACGESSVRKLADAVDDLVTALGELQCELHDWMTMTAPQGTAKS
2LD6 Chain:A ((3-71))
--------------------EEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITSDLLDKIFAGVDMITRMVDKIVSEGSDDIG
General information:
TITO was launched using:
RESULT:
Template:
2LD6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11655 for 398 contacts (-29.3/contact) +
2D Compatibility (PS) -6994 + (NN) -5683 + (LL) 1284
1D Compatibility (HY) -2800 + (ID) 650
Total energy: -26498.0 ( -66.58 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_2LD6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LD6-query.scw
PDB file :
Tito_Scwrl_2LD6.pdb
: