Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSR-LQTRFAQLKQENRAALVTFVTAGDPDYASSLEILKGLPAAGADVIELGMPFTDPMADGPAIQLANIRALDGGQTLARTLQMVREFRSGDSETPLVLMGYFNPIHHYGVERFIAEAKEVGVDGLIVVDLPPEHNEDLCHPAQAAGIDFIRLTTPTTGDQRLPTVLEGSSGFVYYVSVAGVTGANAATLEHVEEAVARLRRHTDLPIGIGFGIRSAEHAAAVARL-ADGVVVGSALIDRIAKARDNAQAVKDVLALCGELAEGVRNAR
1RD5 Chain:B ((2-260))
-SRPVSDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDP--DGPIIQASVARALASGTTMDAVLEMLREV-TPELSCPVVLLSYYKPIMF----RSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSV-----------PRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRL----EEYARGMKNAL
General information:
TITO was launched using:
RESULT:
Template:
1RD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157646 for 2113 contacts (-74.6/contact) +
2D Compatibility (PS) -28163 + (NN) -22481 + (LL) 2052
1D Compatibility (HY) -23600 + (ID) 4950
Total energy: -234788.0 ( -111.12 by residue)
QMean score : 0.616
(partial model without unconserved sides chains):
PDB file :
Tito_1RD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RD5-query.scw
PDB file :
Tito_Scwrl_1RD5.pdb
: