Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSQPSENRLITSARYALCLLTASGVLLSGCASSGVGSVAQTTRAEYYPSCYEPVSHLRSTDNAVRNSAITGAITGGLLGGLAGGLASDENRGRNAALAAAGGALAGGAAGYYMEKQKQISDDRARIGSYGTDVDRSTVEINRSVAYAKSAQSCYQSQFKALLDGRKNKSINEAEGRKRLAEIVSGLQETNALLVAANGRAGENI-SNYTQAYEKDLQQVGVPRAEVTKVAEAENRASTTKGGSKPKTGSNPKVPKEAVATEQTIRKAQDAQSEGNKVASQGQGMIREVCNSPDMGDWAPPSCAKA |
2KGW Chain:A ((223-282)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------IAFGNDGAS------LIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVA------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KGW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 4223 for 302 contacts (14.0/contact) +
2D Compatibility (PS) -6183 + (NN) -130 + (LL) 11948
1D Compatibility (HY) 0 + (ID) 300
Total energy: 9558.0 ( 31.65 by residue)
QMean score : 0.249
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