Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVPNSVSYYRSASYSHVGMVRKVNEDA-SLDAPEAGLWVVADGMGGHAAGDFVSSLIVDTLRR-----IPAASSLPAYVGALRTGLAQVNER-VRQEAGLRGVSVMGST--LVLLAARGNQASCLWAGDSRLYRLRGGVLEAISRDHSYVQELLDNALISEEEARHHPRANVVTRAVGVHEQLELSEAALHVLPGDSFLLCSDGLNKTADDSELRDVLSHSDPYAVVRSLVHLGLTRGAPDNITALVVRAF
2J86 Chain:B ((4-238))
-----------AGLTDCGLIRKSNQDAFYIDEKHQRFFIVADGMGGHAGGEEASRLAVDHIRQYLETHLEDLQHDP--VTLLRQAFLAANHAIVEQQRQNSARADMGTTAVVILLDEKGDRAWCAHVGDSRIYRWRKDQLQQITSDHTWIAQAVQ----TIEQARQHPWRHVLSQCLGREDLSQIDIQPIDLEPGDRLLLCSDGLTEELTDDVISIYLSEPNVQKAAAALVDAAKTHGGRDNVTVVVISV-
General information:
TITO was launched using:
RESULT:
Template:
2J86.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101514 for 1848 contacts (-54.9/contact) +
2D Compatibility (PS) -22730 + (NN) -1972 + (LL) 1352
1D Compatibility (HY) -12400 + (ID) 3750
Total energy: -141014.0 ( -76.31 by residue)
QMean score : 0.396
(partial model without unconserved sides chains):
PDB file :
Tito_2J86.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J86-query.scw
PDB file :
Tito_Scwrl_2J86.pdb
: