Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MAPIFPAAPPGSTGSRAVRCRSTERGGPDMELLNATPLAAAYNQGLDAEGRESLVVIAKGSFDLPLDGREARLLDEQQTLLMVDEFYGEPGFSAPRRECEFVPFKPFCDVLVLGSAQAPGG-RPVQQLTAGIRVGRVSKALTVHGPRQWEPGLLGAGAG-VAQPFQSQDISYASAFGGSHASPDNPGFMDCYMANPAGCGWFPRSADTAEIVGTPMPATEKLGEPVDSPHGRFTPMALGPLGRHWQARVGFAGRYDDAWLAERFPFLPADFDERY-FQSAPADQWTDHLRGGEEVLLLNLTGEERAAFRVPRREVPVTFFLKKGGHETAQARIDTLLVDCDARRVEVTWRIRRPLKRNLFEIAQVLVGSKSAAWWRAR---ELGKDYYPSLAALARSRQAEEDEA |
| 3TNG Chain:A ((5-291)) | TKSRFFSDVAETSSFVFAVA------GADDEVVLETIRLALK-------QKLGKFLLFGKKEDKTLTANESVTWIQT------------DTAEAAAQGAILAVKNKE-ADILVKGFIPTATLMHHVLKKENGLRTDQLLSQIAIFDIPTYHKPLLITDCAMNVAP---------------------------------------KTKEKIAITENALAVAHQIGIT--------------------NPKIALLSAVEEV--------------TAKMPSTLEAQEVVQHFGNQI-----SVSGPLALDVAISKEAALH-----KGITDSSAGEADILIAP-NIETGNALYKSLVYFAGA--KVGSAVVGAKVPIVISSRNDSPENKLASFILTVRLVEK------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TNG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -17366 for 2411 contacts (-7.2/contact) +
2D Compatibility (PS) -29552 + (NN) -8115 + (LL) 6336
1D Compatibility (HY) -7200 + (ID) 1900
Total energy: -57797.0 ( -23.97 by residue)
QMean score : 0.262
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