Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYAEWIAVKVVVSKSIGTVGIRNATLQWGKFYRYTNKDDEISTEEVSSMNVQAGSPQWIASCGREN-ASSGTQGSFDCYDGNTKMGTFSWDDPWKS--GATNTWSFTPASADYAGITSGGNATGTDIGEVTLTLGRFS
1GWY Chain:A ((28-117))
---SRKIAVGI-DNESGGTWTALNAYFRSGTTDVILP------------EFVPNTKALLYSGRKDTGPVATGAVAAFAYYMSSGNTLGVMFSVPFDYNWY-SNWWDVKIYSGKRRADQGMYEDLYYGNPYRGDNGWHEK
General information:
TITO was launched using:
RESULT:
Template:
1GWY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4601 for 579 contacts (-7.9/contact) +
2D Compatibility (PS) -9089 + (NN) -1039 + (LL) 1368
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -16961.0 ( -29.29 by residue)
QMean score : 0.234
(partial model without unconserved sides chains):
PDB file :
Tito_1GWY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GWY-query.scw
PDB file :
Tito_Scwrl_1GWY.pdb
: