Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVSSASLAGKVAFVQGGSRGIGAAIVRRLAAEGASVAFTYVSSADKSRALAAELEGAGASILALHADSADAAALVAAVDEAAARFGRIDILVNNAAVLALGSVEELPLADFERTLAINVRSVFVATQAAVKHMGDGGRVISIGSTNAERMPFAGGATYAMSKSALVGLTKGLARDLGPRGITVNNVQPGPVDTDMNPDDGDFAEALKGLMALPRYARSEEIASFVAYLAGPEAAYITGASLTIDGGFSA
4PCV Chain:B ((5-233))
------AFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAKRLAQE---TGAT--AVFTDSADRDAVIDVVRKSGA----LDILVVNAG------ALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNG-------MAAYAASKSALQGMARGLARDFGPRGITINVVQP------------------------------EEVAGMVAWLAGPEASFVTGAMHTI------
General information:
TITO was launched using:
RESULT:
Template:
4PCV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110181 for 1573 contacts (-70.0/contact) +
2D Compatibility (PS) -21036 + (NN) -14497 + (LL) 2732
1D Compatibility (HY) -14000 + (ID) 4900
Total energy: -161882.0 ( -102.91 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_4PCV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PCV-query.scw
PDB file :
Tito_Scwrl_4PCV.pdb
: