Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRVLYPGTFDPITKGHGDLIERASRLFDHVIIAVAASPKKNPLFSLEQRVALAQEVTKHLPNVEVVGFSTLLAHFVKEQKANVFLRGLRAVSDFEYEFQLANMNRQLAPDVESMFLTPSEKYSFISSTLVREIAALGGDISKFVHPAVADALAERFKR
1QJC Chain:B ((3-157))
--RAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPSKKPMFTLEERVALAQQATAHLGNVEVVGFSDLMANFARNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMAKLA-
General information:
TITO was launched using:
RESULT:
Template:
1QJC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118915 for 1227 contacts (-96.9/contact) +
2D Compatibility (PS) -16869 + (NN) -9148 + (LL) 192
1D Compatibility (HY) -19200 + (ID) 4650
Total energy: -168590.0 ( -137.40 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_1QJC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QJC-query.scw
PDB file :
Tito_Scwrl_1QJC.pdb
: