Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQASSTDTPFVIAGRTYGSRLLVGTGKYKDLDETRRAIEASGAEIVTVAVRRTNIGQNPDEPNLLDVIPPDRYTILPNTAGCYDAVEAVRTCRLARE--LLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIVAGRLAYLAGRMPRKLYASASSPLDGLID
1TYG Chain:C ((2-243))
----------LTIGGKSFQSRLLLGTGKYPSFDIQKEAVAVSESDILTFA------FEA-SQPNFLEQLDLSKYTLLPNTAGASTAEEAVRIARLAKASGLCD---MIKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLAVEAGRLSYEAGRIPLKQYG-----------
General information:
TITO was launched using:
RESULT:
Template:
1TYG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -199875 for 1944 contacts (-102.8/contact) +
2D Compatibility (PS) -26052 + (NN) -11484 + (LL) 648
1D Compatibility (HY) -22000 + (ID) 6250
Total energy: -265013.0 ( -136.32 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_1TYG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TYG-query.scw
PDB file :
Tito_Scwrl_1TYG.pdb
: